AI & automation
Describe it. Watch it build.
An agentic assistant already lives in the editor: it wires up nodes, runs the workflow, and fixes failures for you. A stable public REST API and lifecycle webhooks are on the roadmap — and we keep that honest.
AI assistant · shipped · public API on the roadmap
AI assistant
Describe it. Watch it build.
An agent that lives in the editor. It reads your graph, adds and validates nodes against the real 940-node registry, runs the workflow, then reads the logs and fixes what broke — so you review the plan instead of wiring every step by hand.
Bring your own key — configure the model you trust.
assistant
Proposed changes
- + Load FASTQ
- + FastQC
- + Trim Galore
- + MultiQC
Paper → pipeline
Turn any paper into a pipeline.
Drop in a DOI and BioNodulo reads the paper’s methods, then suggests a matching workflow — pre-wired nodes you open in the editor as a starting point and refine into your own analysis. A scaffold to build on, not a black box.
reading methods
Nature · 2020 · Article
A single-cell RNA-seq atlas of human tissue development
Chen, A., Okonkwo, F., Rossi, M. et al.
suggested workflow · 5 nodes · editable
Shipped vs roadmap
Automation you can use — and what’s coming.
The AI assistant and paper-to-pipeline ship today. The public REST API and webhooks are roadmap — labeled on every card.
In-editor AI assistant
An agent that reads your graph, adds and validates nodes against the real 940-node registry, runs the workflow, then reads the logs and fixes what broke. Bring your own model key.
Paper → pipeline
Paste a DOI and BioNodulo reads the methods, then suggests an editable pipeline scaffold you open in the editor and refine — a starting point, not a black box.
REST API
Planned endpoints will cover workflow management, run creation, status lookup, and artifact access once the public API is stabilized.
Scoped API keys
API-key management exists in parts of the cloud codebase, but the external integration story still needs hardening before a broad launch.
Lifecycle webhooks
Queued, running, completed, and failed events should be delivered through webhooks so pipelines can react as work moves through the queue. Delivery is still incomplete.
Batch & CI integration
Batch, scheduler, and CI integrations are target use cases for the public API — treat them as product direction, not current guarantees.
Automate the busywork today.
Use the in-editor AI assistant now. Until the public API is released, treat its docs as product direction rather than an operational integration guide.