AI & automation

Describe it, and watch it build.

An assistant already lives in the editor: it wires up nodes, runs the workflow, and fixes failures for you. A public REST API and lifecycle webhooks are on the roadmap, and we keep that honest.

AI assistant · shipped · public API on the roadmap

fastq-qc.pipeline
running

Describe it, and watch it build.

An agent inside the editor. It reads your graph, adds and validates nodes against the real registry, runs the workflow, then reads the logs and fixes what broke. You review the plan instead of wiring every step by hand.

assistant
assistant-build · rna-qc.pipeline

nodes validated against the registry before they land

Turn any paper into a pipeline.

Drop in a DOI and BioNodulo reads the paper’s methods, then suggests a matching workflow with the nodes pre-wired. Open it in the editor as a starting point and shape it into your own analysis.

bionodulo.com/doi/10.1038/s41586-020-2649-2

Nature · 2020 · Article

A single-cell RNA-seq atlas of human tissue development

Chen, A., Okonkwo, F., Rossi, M. et al.

Shipped vs roadmap

Automation you can use, and what’s coming.

The AI assistant and paper-to-pipeline ship today. The public REST API and webhooks are roadmap, labeled on every card.

shipped

In-editor AI assistant

An agent that reads your graph, adds and validates nodes against the real 940-node registry, runs the workflow, then reads the logs and fixes what broke. Free on a hosted model, or bring your own model key.

shipped

Paper → pipeline

Paste a DOI and BioNodulo reads the methods, then suggests an editable pipeline scaffold you open in the editor and refine. A starting point you can take apart, not a sealed result.

roadmap

REST API

Planned endpoints will cover workflow management, run creation, status lookup, and artifact access once the public API is stabilized.

roadmap

Lifecycle webhooks

Queued, running, completed, and failed events should be delivered through webhooks so pipelines can react as work moves through the queue. Delivery is still incomplete.

roadmap

Batch & CI integration

Batch, scheduler, and CI integrations are target use cases for the public API. Treat them as product direction, not current guarantees.

bionodulo — run console
The BioNodulo run console streaming per-node execution logs

Automate the busywork today.

Use the in-editor AI assistant now. Until the public API is released, treat its docs as product direction rather than an operational integration guide.