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One canvas for every analysis.

Assemble any of 943 nodes into a workflow graph, inspect AI-assisted wiring, validate it locally, and opt into the cloud beta when managed compute is appropriate.

943 nodes · 51 categories · 22 templates

fastq-qc.pipeline
running
0Analysis nodes
0Node categories
0Bundled templates

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Four surfaces, one portable pipeline.

Design once. The same workflow representation is shared by the desktop app and the managed cloud beta.

node registry — 943 nodes, 51 categories
ampvis2_coreampvis2_rankabundancebiom_normalize_tablebmtaggercami_amber_convertmetabat2vsearch_searchMetagenomics97bcftools_csqbcftools_gtcheckbcftools_mpileupivar_trimlofreq_viterbisnippy_clean_full_alnvcf_comparisonVariant96bedtools_annotatebedbedtools_bamtobedbedtools_clusterbedbedtools_multicovtbedbedtools_nucbedmummer4_dnadiffucsc_chainnetGenomics80abricate_listargnormhmmer_hmmconverthmmer_hmmscanhmmer_nhmmerinterproscanintersect_genesAnnotation54arribafeaturecountskallisto_quantrseqc_inner_distancerseqc_junction_annotationrseqc_read_hexamerrseqc_rna_fragment_sizeRna Seq43fasttreehybpiperhyphy_b_stillhyphy_clnhyphy_fubarhyphy_slacraxmlPhylogeny42bioext_bam2msabioext_bealignchromapdiamond_alignhisat2_alignmmseqs2_easy_searchtracy_alignAlignment37bar_chartcircoscircos_tableviewercircos_wiggle_to_scatterheatmapmanhattan_plotvcf_stats_chartVisualization36ampligoneartic_guppyplexr_biostrings_statsseqkit_split2seqtk_cutNseqtk_dropseseqtk_hetySequence34add_input_name_as_columnaggregatecollection_element_identifiersdatamash_transposefilter_vcfsample_subsetsort_fileData Transform33ai_report_generatorai_variant_interpretationalphagenome_sequence_predictoralphagenome_variant_effectbiapyllm_decisionnim_esm2_embedAi29samtools_calmdsamtools_consensussamtools_depthsamtools_mpileupsamtools_phasesamtools_reheadersamtools_splitSamtools29assembly_statsbellerophonbiscotminiasmravenshovillspadesAssembly24kaiju2kronakaiju2tablekaiju_merge_outputskrakentools_beta_diversitykrakentools_extract_kraken_readsmmseqs2_easy_taxonomytaxonkit_name2taxidTaxonomy24cactus_exportodgi_buildodgi_visualizepangenome_statspggbvg_constructvg_mapPangenomics20bg_diamond_makedbensembl_vepgeo_queryncbi_efetchsra_downloaduniprot_retrieveuniprot_searchDatabases17977 nodes · 54 categories · every one inspectable
$ ready ✓

Built-in tools with visible environments.

943 built-in nodes cover the stack, and each one is inspectable on the canvas before you run anything. BioNodulo provisions supported environments from the tools’ own package metadata, with the requirements in plain sight before the run starts.

nodes
943

nodes

categories
51

categories

bundled templates
22

templates

Turn any paper into a pipeline.

Drop in a DOI and BioNodulo reads the paper’s methods, then suggests a matching workflow with the nodes pre-wired. Open it in the editor as a starting point and shape it into your own analysis.

bionodulo.com/doi/10.1038/s41586-020-2649-2

Nature · 2020 · Article

A single-cell RNA-seq atlas of human tissue development

Chen, A., Okonkwo, F., Rossi, M. et al.

Describe it, and watch it build.

An agent inside the editor. It reads your graph, adds and validates nodes against the real registry, runs the workflow, then reads the logs and fixes what broke. You review the plan instead of wiring every step by hand.

assistant
assistant-build · rna-qc.pipeline

nodes validated against the registry before they land

Start faster

22 bundled workflow starting points.

RNA-Seq, variant calling, single-cell, metagenomics, proteomics, spatial, and more. Open one on the canvas, inspect every step, and make it yours.

Start building your first pipeline.

Download the open-source desktop app and open one of 22 templates, or run in the cloud for RAM-heavy analyses.