The node library

1370 built-in nodes, ready to drop on the canvas.

1370 built-in nodes across 61 categories, with metadata used to plan environments and make workflow requirements visible.

1370 nodes · 61 categories · 23 templates

rnaseq.pipeline
running
0Built-in nodes
0Categories
0Templates
node registry — 1370 nodes, 61 categories
emboss_aaindexextractemboss_descseqemboss_garnieremboss_needleallemboss_printsextractemboss_splitsourceemboss_yankEmboss169aldex2ampvis2_setmetadatabrackencomebin_bamhumann_regroup_tablemerge_metaphlan_tablesvsearch_sortingMetagenomics97artic_minionbcftools_isecbcftools_plugin_tag2tagcnvkit_targetgatk_genotype_gvcfsmutect2vcftools_filterVariant96bbgtobigwigbedtools_coveragebedbedtools_multicovtbedbgzip_compressmummer4_delta_filterucsc_chainprenetucsc_wigtobigwigGenomics84vcflib_abba_babavcflib_segmentfstvcflib_vcfclassifyvcflib_vcfgenosamplenamesvcflib_vcfldvcflib_vcfregionreduce_uncompressedvcflib_wcfstVcflib82abricateamrfinderplusblastxml_to_gapped_gff3fraggenescanhmmer_hmmconvertinterproscanvep_annotateAnnotation54Extract genomic DNA 1bctools_merge_pcr_duplicatesseqfu_checkseqfu_orfseqfu_tabcheckseqtk_listhettracy_basecallSequence50csvtk_add_headercsvtk_del_headercsvtk_foldcsvtk_mutatecsvtk_renamecsvtk_splitcsvtk_xlsx2csvCsvtk47arribachira_mergefeaturecountsrseqc_fpkm_countrseqc_junction_saturationrseqc_read_qualitytximport_stringtieRna Seq45amas_concatclustalohyphy_b_stillhyphy_felhyphy_slacphylogenetic_tree_buildertrimalPhylogeny42seqkit_ampliconseqkit_fa2fqseqkit_headseqkit_renameseqkit_sanaseqkit_splitseqkit_watchSeqkit39bamutil_clip_overlapbioext_bealignbwa_indexcawlignhisat2_alignmmseqs2_easy_linsearchtracy_alignAlignment37arriba_draw_fusionschartscircos_gc_skewcircos_wiggle_to_scattergraphlan_annotatemanhattan_plotvolcano_plotVisualization36Add_a_column1calculate_numeric_paramcompose_text_paramextract_columnsmerge_tablesreshape_tabletsv_to_fastaData Transform33ai_data_extractionai_pipeline_advisoralphagenome_interval_predictorbiapyesmfold_predictnim_boltz2_predictproteinmpnn_designAi29bam_to_samsamtools_bam_to_samsamtools_coveragesamtools_fixmatesamtools_markdupsamtools_sam_to_bamsamtools_viewSamtools291370 registered nodes · 61 categories · sample shown
$ ready ✓

Built-in tools with visible environments.

1370 built-in nodes cover the stack, and each one is inspectable on the canvas before you run anything. BioNodulo provisions supported environments from the tools’ own package metadata, with the requirements in plain sight before the run starts.

nodes
1370

nodes

categories
61

categories

bundled templates
23

templates

What’s inside

Visible requirements, reusable workflow pieces.

The library ships today. A hosted registry with versioning and publishing is the roadmap, clearly labeled below.

shipped

1370 nodes, one palette

QC, alignment, variant calling, single-cell, assembly, metagenomics, proteomics, methylation, spatial, and more. Search the palette and drop the node you need onto the canvas.

shipped

61 categories

Nodes are organized into 61 categories spanning the whole stack, so you can find the right tool by domain instead of memorizing package names.

shipped

Per-node dependency metadata

Nodes carry package metadata that BioNodulo uses to plan and provision supported environments. Contract and execution evidence remains visible as the catalog is certified.

shipped

Custom nodes

Load your own custom nodes from configured local directories to extend the library with lab-specific tools and wrap scripts you already trust.

shipped

Workflow converters

Export workflows to Snakemake, Nextflow, CWL, Galaxy and import them back, so a BioNodulo graph doesn't lock you in and existing pipelines can come along. Export is fully supported; import is best-effort and improving.

roadmap

Hosted registry

A public/private registry service for discovering, versioning, and publishing nodes, with a trust and sandboxing policy, is the direction. It is not yet a live product.

bionodulo — node library
The BioNodulo node library panel showing categorized bioinformatics nodes

Build from visible, reusable pieces.

Open a template, search 1370 built-in nodes, and inspect the environment plan before execution. Load your own custom nodes to make the library yours.