The node library

943 built-in nodes, ready to drop on the canvas.

943 built-in nodes across 51 categories, with metadata used to plan environments and make workflow requirements visible.

943 nodes · 51 categories · 22 templates

rnaseq.pipeline
running
0Built-in nodes
0Categories
0Templates
node registry — 943 nodes, 51 categories
ampvis2_coreampvis2_rankabundancebiom_normalize_tablebmtaggercami_amber_convertmetabat2vsearch_searchMetagenomics97bcftools_csqbcftools_gtcheckbcftools_mpileupivar_trimlofreq_viterbisnippy_clean_full_alnvcf_comparisonVariant96bedtools_annotatebedbedtools_bamtobedbedtools_clusterbedbedtools_multicovtbedbedtools_nucbedmummer4_dnadiffucsc_chainnetGenomics80abricate_listargnormhmmer_hmmconverthmmer_hmmscanhmmer_nhmmerinterproscanintersect_genesAnnotation54arribafeaturecountskallisto_quantrseqc_inner_distancerseqc_junction_annotationrseqc_read_hexamerrseqc_rna_fragment_sizeRna Seq43fasttreehybpiperhyphy_b_stillhyphy_clnhyphy_fubarhyphy_slacraxmlPhylogeny42bioext_bam2msabioext_bealignchromapdiamond_alignhisat2_alignmmseqs2_easy_searchtracy_alignAlignment37bar_chartcircoscircos_tableviewercircos_wiggle_to_scatterheatmapmanhattan_plotvcf_stats_chartVisualization36ampligoneartic_guppyplexr_biostrings_statsseqkit_split2seqtk_cutNseqtk_dropseseqtk_hetySequence34add_input_name_as_columnaggregatecollection_element_identifiersdatamash_transposefilter_vcfsample_subsetsort_fileData Transform33ai_report_generatorai_variant_interpretationalphagenome_sequence_predictoralphagenome_variant_effectbiapyllm_decisionnim_esm2_embedAi29samtools_calmdsamtools_consensussamtools_depthsamtools_mpileupsamtools_phasesamtools_reheadersamtools_splitSamtools29assembly_statsbellerophonbiscotminiasmravenshovillspadesAssembly24kaiju2kronakaiju2tablekaiju_merge_outputskrakentools_beta_diversitykrakentools_extract_kraken_readsmmseqs2_easy_taxonomytaxonkit_name2taxidTaxonomy24cactus_exportodgi_buildodgi_visualizepangenome_statspggbvg_constructvg_mapPangenomics20bg_diamond_makedbensembl_vepgeo_queryncbi_efetchsra_downloaduniprot_retrieveuniprot_searchDatabases17977 nodes · 54 categories · every one inspectable
$ ready ✓

Built-in tools with visible environments.

943 built-in nodes cover the stack, and each one is inspectable on the canvas before you run anything. BioNodulo provisions supported environments from the tools’ own package metadata, with the requirements in plain sight before the run starts.

nodes
943

nodes

categories
51

categories

bundled templates
22

templates

What’s inside

Visible requirements, reusable workflow pieces.

The library ships today. A hosted registry with versioning and publishing is the roadmap, clearly labeled below.

shipped

943 nodes, one palette

QC, alignment, variant calling, single-cell, assembly, metagenomics, proteomics, methylation, spatial, and more. Search the palette and drop the node you need onto the canvas.

shipped

51 categories

Nodes are organized into 51 categories spanning the whole stack, so you can find the right tool by domain instead of memorizing package names.

shipped

Per-node dependency metadata

Nodes carry package metadata that BioNodulo uses to plan and provision supported environments. Contract and execution evidence remains visible as the catalog is certified.

shipped

Custom nodes

Load your own custom nodes from configured local directories to extend the library with lab-specific tools and wrap scripts you already trust.

shipped

Bidirectional converters

Import and export workflows to and from SnakeMake, NextFlow, CWL, Galaxy, so a BioNodulo graph doesn't lock you in and existing pipelines can come along.

roadmap

Hosted registry

A public/private registry service for discovering, versioning, and publishing nodes, with a trust and sandboxing policy, is the direction. It is not yet a live product.

bionodulo — node library
The BioNodulo node library panel showing categorized bioinformatics nodes

Build from visible, reusable pieces.

Open a template, search 943 built-in nodes, and inspect the environment plan before execution. Load your own custom nodes to make the library yours.